Identification of key claudin genes associated with survival prognosis and diagnosis in colon cancer through integrated bioinformatic analysis

نویسندگان

چکیده

The claudin multigene family is associated with various aberrant physiological and cellular signaling pathways. However, the association of claudins survival prognosis, pathways, diagnostic efficacy in colon cancer remains poorly understood. Methods: Through effective utilization bioinformatics methods, including differential gene expression analysis, set enrichment analysis protein-protein interaction (PPI) network single sample (ssGSEA), mutational variance identifying receiver operating characteristic curve Cancer Genome Atlas adenocarcinoma (COAD). Results: We found that: CLDN2, CLDN1, CLDN14, CLDN16, CLDN18, CLDN9, CLDN12, CLDN6 are elevated COAD. In contrast, CLDN8, CLDN23, CLDN5, CLDN11, CLDN7, CLDN15 downregulated By analyzing public datasets GSE15781 GSE50760 from NCBI-GEO ( https://www.ncbi.nlm.nih.gov/geo/ ), we have confirmed that CLDN14 significantly upregulated CLDN8 CLDN23 normal colon, tumor, liver metastasis tissues human samples. Various mutated to be Conclusion: immune regulation, pathway regulations, diagnosis These findings may provide new molecular insight into treatment cancer.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Identification of key genes and molecular mechanisms associated with dedifferentiated liposarcoma based on bioinformatic methods

BACKGROUND Dedifferentiated liposarcoma (DDLPS) is one of the most deadly types of soft tissue sarcoma. To date, there have been few studies dedicated to elucidating the molecular mechanisms behind the disease; therefore, the molecular mechanisms behind this malignancy remain largely unknown. MATERIALS AND METHODS Microarray profiles of 46 DDLPS samples and nine normal fat controls were extra...

متن کامل

Identification of key genes and pathways associated with neuropathic pain in uninjured dorsal root ganglion by using bioinformatic analysis

Purpose Neuropathic pain is a complex chronic condition occurring post-nervous system damage. The transcriptional reprogramming of injured dorsal root ganglia (DRGs) drives neuropathic pain. However, few comparative analyses using high-throughput platforms have investigated uninjured DRG in neuropathic pain, and potential interactions among differentially expressed genes (DEGs) and pathways wer...

متن کامل

Integrated analysis of genes associated with poor prognosis of patients with colorectal cancer liver metastasis

Colorectal cancer (CRC) is one of the most common malignances in the gut. Liver is the most common metastasis site of CRC. This study focuses on the primary CRC and its liver metastasis, aiming to discover several liver metastasis related genes and provide therapeutic candidates. We compared gene expression patterns among the groups of normal colorectal mucosa, primary tumor and the liver metas...

متن کامل

Identification of key genes and pathways in Parkinson's disease through integrated analysis

Parkinson's disease (PD) is a progressive, degene-rative neurological disease, typically characterized by tremors and muscle rigidity. The present study aimed to identify differe-ntially expressed genes (DEGs) between patients with PD and healthy patients, and clarify their association with additional biological processes that may regulate factors that lead to PD. An integrated analysis of publ...

متن کامل

Identification of key genes and pathways involved in vitiligo vulgaris by gene network analysis

Background and Aim: Vitiligo vulgaris is an acquired, chronic skin and hair condition characterized clinically by loss of melanin, which, if untreated, is typically progressive and irreversible. The aim of the present study was to identify potential genes involved in the pathogenesis of vitiligo. Methods: One dataset of mRNA expression in patients with vitiligo (GSE65127) were obtained from ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Frontiers in Genetics

سال: 2023

ISSN: ['1664-8021']

DOI: https://doi.org/10.3389/fgene.2023.1221815